Research Article |
Corresponding author: Jeffrey Sosa-Calvo ( jsosacalvo@gmail.com ) Corresponding author: Matthew L. Buffington ( matt.buffington@ars.usda.gov ) Academic editor: Miles Zhang
© 2024 Jeffrey Sosa-Calvo, Mattias Forshage, Matthew L. Buffington.
This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
Citation:
Sosa-Calvo J, Forshage M, Buffington ML (2024) Circumscription of the Ganaspis brasiliensis (Ihering, 1905) species complex (Hymenoptera, Figitidae), and the description of two new species parasitizing the spotted wing drosophila, Drosophila suzukii Matsumura, 1931 (Diptera, Drosophilidae). Journal of Hymenoptera Research 97: 441-470. https://doi.org/10.3897/jhr.97.118567
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Based on host specificity and distribution data, it has been hypothesized that Ganaspis brasiliensis (Ihering, 1905), a natural enemy of the horticultural pest spotted-wing drosophila, Drosophila suzukii Matsumura, 1931 (SWD), was composed of multiple, cryptic species. Parasitoid wasps assigned to the species name Ganaspis brasiliensis and Ganaspis cf. brasiliensis were investigated using a molecular dataset of ultra-conserved elements (UCEs) and morphology. We report strong evidence for the presence of cryptic species based on the combination of UCE data (1,379 UCE loci), host specificity, ovipositor morphology, and distribution data. We describe these new cryptic species as: Ganaspis lupini sp. nov., and Ganaspis kimorum sp. nov. Ganaspis lupini was formerly recognized as Ganaspis brasiliensis G3, and Ganaspis kimorum as Ganaspis brasiliensis G1. These two new species appear to be restricted to the temperate climates, whereas Ganaspis brasiliensis (formerly recognized as Ganaspis brasiliensis G5) has a more pan-tropical distribution. We investigated the characterization of the ovipositor clip of these species, and hypothesize that G. kimorum, which has a reduced ovipositor clip, has an advantage in ovipositing into fresh fruit, still on the host plant, while attacking SWD; as a corollary, G. brasiliensis and G. lupini, which both have a larger ovipositor clip, are better adapted to attacking hosts in softer, rotting fruit on the ground. As Ganaspis kimorum was authorized for release as a biological control agent against SWD under the name Ganaspis brasiliensis G1, the results here have direct impact on the field of biological control.
Biological control, cryptic species, pest fly, soft fruit, taxonomy
Species that have not yet manifested morphological differences can often be separated based on molecular sequence data as well as behavioral data (
Ganaspis brasiliensis (Ihering, 1905) (Hymenoptera: Figitidae: Eucoilinae) has been hypothesized to be a cryptic species complex (
We utilize an integrative approach, including novel ultra-conserved element (UCE) molecular data, morphological data (based on ovipositor and scutellar characters), published host specificity studies, published crossing experiments, and distribution data to distinguish at least three lineages within the formerly recognized Ganaspis brasiliensis. As such, we herewith describe two new species: Ganaspis kimorum, new species, and Ganaspis lupini, new species. In light of these new data, Ganaspis brasiliensis is redescribed and the circumscription of this species updated.
The source for all specimens in this study resulted from the combined rearing efforts of collaborators from around the world, as well as researchers with established Ganaspis spp. laboratory colonies for genetic research; these collaborators are listed in Suppl. material
Representative specimens were imaged using the Macropod®™ multiple-focus imaging system to illustrate diagnostic characters; single montage images were produced from image stacks with the program Zerene Stacker®™. Scanning electron micrographs were generated using a Hitachi®™ TM3000 desktop scanning electron microscope; specimens were coated in 25–30 nm gold-palladium alloy (Cressington®™ 108 auto sputtercoater), using ‘analysis’ voltage, running in ‘compo’ mode. Diagnoses focus on easily recognized gross morphologies, and species/genera that can be confused with G. brasiliensis are diagnosed. Terminology for all descriptive characters, as well as phylogenetic characters, follow Buffington and Forshage (2016).
DNA was extracted using the Qiagen DNeasy® Blood and Tissue Kit (Qiagen, Valencia, CA, U.S.A.). DNA extractions were performed by either placing an entire individual (male or female) or their metasoma, in a 2 mL tube with 0.5 mm diameter glass lysis beads (BioSpec Products, Bartlesville, OK, U.S.A.). The samples were placed in a -20 °C freezer for ~10 minutes and then placed in a TissueLyser II (Qiagen Inc., USA) for 30 s at 30 Hz to disrupt the tissue and facilitate the lysis process. Cell lysis was performed overnight with 20 µL of Proteinase K in a dry bath shaker at 56 °C and at 500 rpm. The recommendations of the manufacturer were followed for the extraction process except that the cleaned, extracted DNA from the spin-collection columns was eluted with two (rather than one) washes, each consisting of 55 µL of nuclease-free water, differing from the manufacturer’s recommendation of 200 µL of AE buffer. DNA extractions were quantified using 2 µL of DNA template in a Qubit 4 Fluorometer and with the 1X dsDNA High Sensitivity (HS) assay Kit (Thermo Fisher Scientific, Inc.). DNA extraction concentration ranged from 0.001–7.20 ng/µL (mean = 0.943 ng/µL).
Prior to library preparation, 1–50 ng of DNA template was sheared to an average fragment length of 300–600 bp using a Qsonica Q800R2 Sonicator (Qsonica LLC, Newton, CT, U.S.A.) for 60 s with amplitude set at 25 and the pulse set at 10. Libraries were prepared on 96-well plates on a DynaMag™-96 side magnet (Invitrogen, Thermo Fischer Scientific, Waltham, MA, U.S.A.) and using the Kapa Hyper Prep Library Kit (Roche Diagnostics Corporation, Indianapolis, IN, U.S.A.) as described in
Post-PCR libraries were pooled at equimolar concentrations into 25 pools, each containing 6–12 libraries. Pool concentration was adjusted to ~71.5 ng/µL by drying the sample in a vacuum centrifuge for 45–60 min or until all liquid was evaporated at 60 °C, and then by re-suspending the pool in nuclease-free water at the estimated volume. We then used 2 µL of the resuspended product to measure the pool final concentration in a Qubit 4 Fluorometer with the 1X dsDNA BR assay Kit. The final concentration of the pre-enrichment pools was 63.6–91.4 ng/µL. The pool was enriched by using the myBaits (Arbor Biosciences, Ann Harbor, MI, U.S.A.) UCE Hymenoptera bait set (“Hymenoptera 2.5Kv2P”) targeting 2590 conserved loci in Hymenoptera (
We trimmed the demultiplexed FASTQ output files for adapter contamination and low-quality bases using Illumiprocessor v.2.0.6 (Faircloth 2013, modified by R. Dikow and P. Frandsen to use trim_galore v0.4.1 (
Initial analyses were conducted on the unpartitioned three alignments generated (Ganasbra237t at 50%, 60%, and 70%, respectively) using IQ-TREE multicore v.2.1.3 (
To identify and remove outlier or poorly aligned sequence fragments we used the Python tool SPRUCEUP (
We partitioned the resulting trimmed alignment using the Sliding Window Site Characteristics based in Entropy method (SWSC-EN;
We tested for model violation based on assumptions of stationarity and homogeneity by performing a test of symmetry (
We performed further maximum-likelihood (ML) analyses on the trimmed alignment with the different partitioning schemes using IQ-TREE multicore v.2.1.3 (
We employed the species delimitation plugin v.1.4.5 (
Summary of differences among species in the Ganaspis brasiliensis species complex.
Species | Host | Distribution | scutellum | Ovipositor clip | Intra-species genetic distance | Inter species genetic distance |
---|---|---|---|---|---|---|
Ganaspis brasiliensis | D. melanogaster | Pan tropical: Neotropical, Afrotropical, Hawaiian | sides with carinae/grooves | Present, large | 0.041 | 0.076 |
D. simulans | ||||||
other Drosophila | ||||||
Ganaspis lupini | SWD and other Drosophila | Palearctic: China, Japan, Korea | sides smooth | Present, large | 0.05 | 0.067 |
Ganaspis kimorum | SWD | Palearctic: China, Japan, Korea, Nearctic: USA, Canada | sides smooth | Present, small to indistinguishable | 0.021 | 0.075 |
Employing the Phyluce script phyluce_assembly_match_contigs_to_barcode and a COI sequence as reference (‘Ganaspis brasiliensis’ downloaded from GenBank accession No. MN013168.1), we extracted from the UCE data bycatch (
In average, we recovered 1,369 UCE loci (range: 672–1,670) with a mean length of 878 bp (range: 341–1,801 bp). The final alignment included 237 terminals, 1,379 UCE loci, and 1,221,982 bp of sequence data, of which 523,179 were parsimony-informative sites. The alignment was composed mostly of samples in the genus Ganaspis and two samples belonging to the genus Leptopilina Föster, 1862, as a distant outgroup. The test of symmetry conducted in IQTREE 2.1.3 (
Morphological examination of the scutellum and ovipositor revealed subtle but consistent differences among specimens examined (Fig.
Ganaspis brasiliensis species group
Included species. Ganaspis brasiliensis (Ihering, 1905); Ganaspis kimorum sp. nov.; Ganaspis lupini sp. nov.
Diagnosis. Scutellum large, terminating anterior to the end of the scutellum; convex in lateral view, bulging slightly. Marginal cell closed in forewing. Posterior edge of metapleuron uninterrupted. Segments of female antennal clava very moderately enlarged and concolorous with other flagellomeres (Buffington and Forshage 2016). In the Ganaspis brasiliensis species group, the plate covers at least half of the scutellum, when viewed dorsally; in lateral view, the scutellar plate is clearly convex, even bulging, anterior to the glandular release pit. In other Ganaspis species, the scutellar plate may be as large or smaller, covering less than half of the scutellum when viewed dorsally; the plate, in lateral view, is flat or gently convex, and if large, not bulging. The marginal cell and claval characters are quite variable in other Ganaspis species.
Description. Coloration with head, mesosoma, and metasoma black to dark brown; legs uniformly light brown. Sculpture on vertex, lateral surface of pronotum, mesosoma, and metasoma absent, surface entirely smooth (Fig.
Head. In anterior view, rounded, approximately as high as broad; in lateral view, more transverse, not protruding. Pubescence on head sparse, nearly glabrous. Sculpture along lateral margin of occiput absent (Fig.
Labial-maxillary complex. Apical segment of maxillary palp with pubescence, consisting only of erect setae. First segment of labial palp shorter than apical segment. Labial palp composed of two segments. Apical seta on apical segment of maxillary palp longer than twice length of second longest apical seta. Erect setae medially on apical segment of maxillary palp absent. Maxillary palp composed of four segments. Last two segments of maxillary palp (in normal repose) curved inwards. Distal margin of subapical segment of maxillary palp slanting inwards, apical segment bending inwards. Apical segment of maxillary palp more than 1.5× as long as preceding segment.
Antenna. Articulation between flagellomeres in antenna moniliform, segments distinctly separated by narrow neck-like articulation (Fig.
Mesosoma. Macrosculpture on lateral surface of pronotum absent (Fig.
Metapectal-propodeal complex. Metapectal cavity anterodorsal to metacoxal base present, well-defined (Fig.
Legs. Pubescence posterolaterally on metacoxa with a confined, elongate, dense hair patch, other pubescence lacking. Microsculpture on hind coxa absent (Fig.
Wings. Pubescence of fore wing present, long, dense on most of surface (Fig.
Metasoma. Petiole about as long as wide. Surface of petiole dorsally striate, laterally shagreen. Posterior part of female petiole not abruptly widened. Ventral flange of annulus of female petiole absent. Ventral and lateral parts of petiolar rim narrow. Setal band (hairy ring) at base of tergum 3 present, complete dorsally, extending ventrally to ventral margin of tergum, beneath petiole. Tergum 3 indistinct, fused with syntergum. Posterior margin of tergum 3 indistinct, fused with tergum 4 in syntergum. Posterior margin of tergum 4 evenly rounded. Sternum 3 encompassed by syntergum. Sculpture on metasomal terga absent. Syntergum present with terga 3 to 5 fused, ventral margin rounded. Annulus present as continuous ring. Peglike setae on T6–T7 absent. Postero-ventral cavities of female metasoma T7 absent. Female postero-ventral margin of T6–T7 straight, parallel, with distinct postero-ventral setal tuft. Terebrum and hypopygium (in lateral view) straight, pointing posteriorly. Ovipositor clip present.
Separated from G. kimorum and G. lupini by the sculpturing on the side of the scutellum. In G. brasiliensis, this area has distinct dorso-ventral carinae enclosing one or a few cells (Fig.
Comparison of the ovipositor clip between G. lupini (A, C) and G. kimorum (B, D). A G. lupini ovipositor tip, lateral view B G. kimorum, ovipositor tip, lateral view C G. lupini ventral of ovipositor showing ovipositor clip and membrane D G. kimorum ventral of ovipositor showing ovipositor clip and membrane. Black arrows indicate the location of the ovipositor clip.
As in the description for the G. brasiliensis species complex, but lateral aspect of pronotum with distinct ridge with associated fovea; ovipositor clip large, extending beyond the halfway point across the fused ovipositor valve. Previous studies referencing ‘Gb G5’ or ‘G5’, refer to this species (
Lectotype (female): Collection Ashmead [first label]; Ipiranga, Brazil [second label]; No 2066 from a peach [third label]; S.S. Paulo Museum 190 [third label]; Lectotype [fourth label, red, Weld’s hand]; Ipiranga, S.S. Paulo Museum 190, No. 4066a, on peach [folded hand-written label]; EUCOILIDAE, Pseudeucoila (Hexamerocera) brasiliensis Ashmead [white computer generated label]; USNMENT0119750. Deposited in
Panama: Monte Oscuro, June-July ’95 [1895] Z-5203, USNMENT01119746 (male); USNMENT01119747 (female); Panama City, Z-3661 [no date]; 2 male specimens/ pin: USNMENT01119748–USNMENT01119749, USNMENT01119740–USNMENT01119742; Canal Zone, Balboa, VI.10.1936, J Zetek, collector, P.R. no. 1803; 4 females: USNMENT01119645–USNMENT01119648; 3 males: USNMENT01119649, USNMENT01119743, USNMENT01119744; Monte Oscuro, Panama City, Z-3666 [no date]; 1 female: USNMENT01119650; Monte Oscuro, Panama City, Z-3665 [no date]; 1 female: USNMENT01119651; Monte Oscuro, Panama City, Z-3665, ex Anastrepha acidusa, emerge 2–3 weeks after last fly out-25 days after pupation [no date]; 1 female: USNMENT01119652; Ancon, Canal Zone, Z-2748, Ex Anastrepha fratercula or Drosophila striata, July 1927, I. Molino, collector; 2 females: USNMENT01119653 and USNMENT01119654; Taboga Island, Sept. 30, 1926, I. Molino, collector, Z-2727; 11 females: USNMENT01119656–USNMENT01119665, 1male: USNMENT01119666; Panama City, Z-3222, Ex Anastrepha serpentina in nispero, May 1930, J Zetek, collector; 2 males: USNMENT01119667, USNMENT01119668; Ancon, Canal Zone, Z-2715, Oct. 12, 1926, bred by Molina, ex fruit of Spondias lutea, parasite of diptera Z-2716; 1 female: USNMENT01119669. Guadeloupe: Ganaspis G. 302.1, Y. Carton; 3 females: USNMENT01119670–USNMENT01119672; 3 males USNMENT01119673–USNMENT01119675.
> Pseudoeucoila_brasiliensis_AP7BC36 (USNMENT01119647)
NNNNNNNNNNNNNNNNNNNNNAATTTGATCAGGAATAATTGGATCAAGTTTAAGAATAATTATTCGTCTA GAATTAGGCACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTTACCACTCATGC ATTTGTAATAATTTTTTTTATAGTAATACCAATTATAGTAGGAGGATTTGGAAATTACTTAATTCCCT TAATATTATCTGCCCCTGATATATCATTTCCTCGTCTTAATAATATAAGATTCTGATTATTAATTCCT TCTTTAATTTTAATAATTTCAAGTATATTTATTGATGAAGGATCTGGAACCGGATGAACCATTTATCC TCCTTTATCATTAAATAAATCACATCCAGGAATTTCAACTGATTTAGTAATTTTCTCCCTTCATCTTA GAGGAATTTCTTCAATTTTAGGATCAATTAATTTTATTACAACTATTTTAAATATACGACCTAATTTT ATAAGTATAGATAAAATTTCTTTATTTACTTGATCCATTTTTCTTACTACCATTTTATTATTATTATC TTTACCAGTATTAGCAGGCGGAATCACTATATTATTATTTGACCGAAACATTAATACATCTTTTTATG ACCCAATAGGAGGAGGTGATCCTATTC
>Ganaspis_brasiliensis_2966
TATATTATATTTTATTTTTGGAATTTGATCAGGAATAATTGGATCAAGTTTAAGAATAATTATTCGACTAGAAT TAGGCACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTTACCACTCATGCATTTGTAA TAATTTTTTTTATAGTAATACCAATTATAGTAGGAGGATTTGGAAATTACTTAATTCCTTTAATATTATCTG CCCCTGATATATCATTTCCTCGTCTTAATAATATAAGATTCTGATTATTAATCCCTTCTTTAATTTTAATAA TTTCAAGTATATTTATTGATGAAGGATCTGGAACAGGATGAACAGTTTATCCTCCTTTATCATTAAATAAAT CACATCCAGGAATTTCAACTGATTTAGTAATTTTCTCCCTTCATCTTAGAGGAATCTCTTCAATTCTAGGAT CAATTAATTTTATTACAACTATTTTAAATATACGACCTAATTTTATAAGTATAGATAAAATTTCTTTATTTA CTTGATCTATTTTTCTTACTACCATTTTACTATTATTATCTTTACCAGTATTAGCAGGTGGAATCACTATAT TACTGTTTGATCGAAACATTAATACATCTTTTTATGATCCAATAGGAGGAGGTGACCCTATTCTATACCAAC ATTTATTC
>Ganaspis_brasiliensis_2919
TATATTATATTTTATTTTTGGAATTTGATCAGGAATAATTGGATCAAGTTTAAGAATAATTATTCGACTAGAA TTAGGCACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTTACCACTCATGCATTTGT AATAATTTTTTTTATAGTAATACCAATTATAGTAGGAGGATTTGGAAATTACTTAATTCCTTTAATATTAT CTGCCCCTGATATATCATTTCCTCGTCTTAATAATATAAGATTCTGATTATTAATCCCTTCTTTAATTTTA ATAATTTCAAGTATATTTATTGATGAAGGATCTGGAACAGGATGAACAGTTTATCCTCCTTTATCATTAAA TAAATCACATCCAGGAATTTCAACTGATTTAGTAATTTTCTCCCTTCATCTTAGAGGAATCTCTTCAATTC TAGGATCAATTAATTTTATTACAACTATTTTAAATATACGACCTAATTTTATAAGTATAGATAAAATTTCT TTATTTACTTGATCTATTTTTCTTACTACCATTTTACTATTATTATCTTTACCAGTATTAGCAGGTGGAAT CACTATATTACTGTTTGATCGAAACATTAATACATCTTTTTATGATCCAATAGGAGGAGGTGACCCTATTC TATACCAACATTTATTC
Kionobiont endoparasitoid of Drosophila melanogaster, D. simulans, and other Drosophila in decaying fruit. Original description and some label data suggesting Anastrepha (Tephritidae) as a host are most likely to represent erroneous associations (cf. Buffington and Forshage 2016).
Separated from G. brasiliensis by the completely smooth lateral aspect of the scutellum (Fig.
As in description for G. brasiliensis species complex, but with the lateral aspect of the scutellum completely smooth; ovipositor clip large, extending beyond the halfway point across the fused ovipositor valve. Previous studies referencing ‘Gb G3’ or ‘G3’ refer to this species (
Holotype. Japan: Nagano, Yamanouchi, Shiga Kogen Hasuike Ski Resort 36.7189°N, 138.4935°E ex D. suzukii, D. subpulchrella on Vaccinium spp. 17 Aug 2017 Kenis, collector G3_Nagano, USNMENT01867461. Deposited in
This species is named in honor of the manga character "Lupin the Third" (MonkeyPunch 1967). The name reflects the ‘G3’ naming convention of this species, as well as Lupin the Third’s personality as professional thief that sometimes tries to do good. We think G. lupini is certainly proficient in attacking SWD, but does not attack the most destructive stage of this pest fly.
>Ganaspis_lupini_GB86
TATATTATATTTTATTTTTGGAATTTGATCAGGAATAATTGGATCAAGTTTAAGAATAATTATTCGACTAGAAT TAGGTACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTAACCACTCATGCATTTGTAA TAATTTTTTTTATAGTAATACCAATTATAGTAGGAGGATTTGGAAATTATTTAATTCCCTTAATATTATCTA CCCCTGATATATCATTTCCTCGTCTCAATAATATAAGATTCTGATTATTAATTCCTTCTTTAATTTTAATAA TTTCAAGTATATTTATTGATGAAGGATCTGGAACCGGATGAACAGTTTATCCTCCTTTATCATTAAATAAAT CACACCCAGGAATTTCAACTGATTTAGTAATTTTCTCCCTTCATCTTAGAGGAATTTCTTCAATTCTAGGAT CAATTAATTTTATTACAACTATTTTAAATATACGACCTAATTTTATAAGTATAGATAAAATTTCTTTATTTA CTTGATCTATTTTTCTTACTACCATTTTATTATTATTATCTTTACCAGTATTAGCAGGTGGAATTACTATAT TACTATTTGACCGAAACATTAATACATCTTTTTATGACCCAATAGGAGGAGGTGACCCTATTCTATACCAAC ATTTATTC
>Ganaspis_lupini_BBP860
TATATTATATTTTATTTTTGGAATTTGATCAGGAATAATTGGATCAAGTTTAAGAATAATTATTCGACTAGAAT TAGGTACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTAACCACTCATGCATTTGTAA TAATTTTTTTTATAGTAATACCAATTATAGTAGGAGGATTTGGAAATTATTTAATTCCCTTAATATTATCTA CCCCTGATATATCATTTCCTCGTCTCAATAATATAAGATTCTGATTATTAATTCCTTCTTTAATTTTAATAA TTTCAAGTATATTTATTGATGAAGGATCTGGAACCGGATGAACAGTTTATCCTCCTTTATCATTAAATAAAT CACACCCAGGAATTTCAACTGATTTAGTAATTTTCTCCCTTCATCTTAGAGGAATTTCTTCAATTCTAGGAT CAATTAATTTTATTACAACTATTTTAAATATACGACCTAATTTTATAAGTATAGATAAAATTTCTTTATTTA CTTGATCTATTTTTCTTACTACCATTTTATTATTATTATCTTTACCAGTATTAGCAGGTGGAATTACTATAT TACTATTTGACCGAAACATTAATACATCTTTTTATGACCCAATAGGAGGAGGTGACCCTATTCTATACCAAC ATTTATTC
Koinobiont endoparasitoid of Drosophila lutescens, D. rufa, and D. biauraria (Mitsui and Kimura 2010).
Holotype. Japan: Tokyo Kimura Lab, field collected G. xanthopoda ‘suzukii type’ Collected June 2010 Received
Separated from G. brasiliensis by the completely smooth lateral aspect of the scutellum (Fig.
As in description for G. brasiliensis species complex, but with the lateral aspect of scutellum completely smooth; ovipositor clip reduced, not extending beyond the halfway point across the fused ovipositor valve. Previous studies referencing ‘Gb G1’ or ‘G1’ refer to this species (
Named in honor of Prof. Kimura (Hokkaido University, retired) and Dr Kim Hoelmer (USDA-ARS, retired). The name is a combination of Kimura and Kim Hoelmer.
>Ganaspis_kimorum_BBP857
NATATTATATTTTATTTTTGGTATTTGATCAGGAATAATTGGATCAAGTTTAAGAATAATTATTCGATTA GAATTAGGAACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTTACTACTCATGC ATTTGTAATAATTTTTTTTATAGTTATACCAATTATAGTTGGAGGATTTGGAAATTACTTAATTCCTT TAATATTATCTGCTCCTGATATATCATTCCCTCGTCTTAATAATATAAGATTTTGATTATTAATCCCT TCTTTAATTTTAATAATTTCAAGTATATTTATTGATGAAGGGTCTGGAACTGGATGAACAGTTTATCC TCCTTTATCACTAAATAAGTCCCACCCAGGAATCTCAACTGACTTAGTAATTTTTTCTCTTCATCTTA GAGGAATTTCTTCAATTTTAGGATCAATTAATTTTATTACAACTATTCTAAATATACGACCAAATTTA ATAAGTATAGATAAAATTTCTTTATTTACTTGATCCATTTTTCTTACCACTATTTTATTATTATTATC TTTACCAGTATTAGCAGGTGGAATCACTATATTACTTTTTGACCGAAATATTAATACATCTTTTTATG ACCCAATAGGAGGAGGAGACCCAATTCTATACCAACACTTATTT
>Ganaspis_kimorum_233137974_E02 (partial sequence, 592 bp)
ATTAGAATTAGGAACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTTACTACTCAT GCATTTGTAATAATTTTTTTTATAGTTATACCAATTATAGTTGGAGGATTTGGAAATTACTTAATTCC TTTAATATTATCTGCTCCTGATATATCATTCCCTCGTCTTAATAATATAAGATTTTGATTATTAATCC CTTCTTTAATTTTAATAATTTCAAGTATATTTATTGATGAAGGGTCTGGAACTGGATGAACAGTTTAT CCTCCTTTATCACTAAATAAGTCCCACCCAGGAATCTCAACTGACTTAGTAATTTTTTCTCTTCATCT TAGAGGAATTTCTTCAATTTTAGGATCAATTAATTTTATTACAACTATTCTAAATATACGACCAAATT TAATAAGTATAGATAAAATTTCTTTATTTACTTGATCCATTTTTCTTACCACTATTTTATTATTATTA TCTTTACCAGTATTAGCAGGTGGAATCACTATATTACTTTTTGACCGAAATATTAATACATCTTTTTA TGACCCAATAGGAGGAGGAGACCCAATTCTATACCAACACTTATTT
>Ganaspis_kimorum_233137957_F06
NATATTATATTTTATTTTTGGTATTTGATCAGGAATAATTGGATCAAGTTTAAGAATAATTATTCGATTA GAATTAGGAACCCCTTCACAATTAATTAATAATGATCAAATTTATAATACAATTGTTACTACTCATGC ATTTGTAATAATTTTTTTTATAGTTATACCAATTATAGTTGGAGGATTTGGACATTACTTAATTCCTT TAATATTATCTGCTCCTGATATATCATTCCCTCGTCTTAATAATATAAGATTTTGATTATTAATCCCT TCTTTAATTTTAACAATTTCAAGTATATTTATTGATGAAGGATCTGGAACCGGATGAACAGTTTATCC TCCTTTATCACTAAATAAGTCCCACCCAGGAATCTCAACTGACTTAGTAATTTTTTCTCTTCATCTTA GAGGAATTTCTTCAATTTTAGGATCAATTAATTTTATTACAACTATTCTAAATATACGACCAAATTTA ATAAGTATAGATAAAATTTCTTTATTTACTTGATCCATTTTTCTTACCACTATTTTATTATTATTATC TTTACCAGTATTAGCAGGTGGAATCACTATATTACTTTTTGACCGAAATATTAATACATCTTTTTATG ACCCAATAGGAGGAGGAGACCCAATTCTATACCAACACTTATTT
Koinobiont endoparasitoid of Drosophila suzukii (
The logic behind this comprehensive phylogenetic species delimitation study is based on observations that COI can sometimes be error-prone in species discrimination in Eucoilinae, as well as other insect groups (
The dataset here has yielded more nuanced results concerning in-group relationships than previous studies of these taxa. For instance, Ganaspis lupini has three distinct subclades within the species; we have decided to retain these three clades as members of the same species. Within Ganaspis brasiliensis, even more subclades can be discerned, some of which may eventually be split out into additional species. The ratio of the intra vs inter pairwise tree distances (Table
Biogeographically, G. brasiliensis appears to be a pan-tropical species, and seemingly no specimens of this species have been collected outside the subtropics (with Hawai’i being the most ‘temperate’ locality), while Ganaspis lupini and G. kimorum appear to be temperate species.
This appears to be the first study to utilize the ovipositor clip for species-level discrimination. Prior to this study, the clip was formally described (
The pattern observed in the Ganaspis brasiliensis species complex can be interpreted along the same lines. In the case of both G. brasiliensis and G. lupini, the ovipositor clip has retained its typical size, spanning the width and depth of the fused valve of the ovipositor (Figs
Phylogeny of the Ganaspis brasiliensis species complex based on the SYMTEST analysis. Specific populations, mentioned in previous studies, are highlighted by arrows, as well as where the holotypes of the two new species are located. The adventive population in British Columbia is also noted.
What is the future of species delimitation using UCE data? We have demonstrated here that these data are quite effective at discriminating among morphologically virtually identical but biologically distinct species. We may very well be observing the immediate after-effects of speciation, where morphological characters have not yet manifested themselves to be observed, but clearly, biological and genetic characters distinguishing these species are present. And if this is the case, the much larger amount of sequence data per specimen that UCE methodology provides is rather critical. As the cost of this technique continues to decline, we predict this technique will certainly be considered more closely in the future.
Perhaps a more difficult question to consider is: what is the future of Ganaspis taxonomy? Ganaspis currently has only 49 nominal species, of which 17 actually belong in other genera and are awaiting new combinations, while 8 are nomina inquirenda, the types of which have never been studied by modern researchers, leaving 24 described Ganaspis species. But then there are an additional 46 Ganaspis species that are currently classified in other genera and await new combinations in Ganaspis (unpublished data). On top of this there are numerous undescribed species, including a remarkable number of ‘BINs’ in BOLD (Sosa-Calvo and Buffington, pers. obsv.) But these considerations are all based on current circumscription where it seems very likely that Ganaspis is at least a paraphyletic assemblage of all the “typical Ganaspini” without certain striking apomorphies which define related genera such as Areaspis Lin, 1988, Didyctium Riley, 1879, Discaspis Lin, 1988, Endecameris Yoshimoto, 1963, Gastraspis Lin, 1988 and Hexacola Föster, 1869 (cf. the keys in van Noort et al. 2014; Buffington and Forshage 2015). But there is also a possibility that this represents a morphology that several lineages have been converging into based on similar life histories (the similarity between different Ganaspis and Leptopilina species attacking similar drosophilid hosts is rather striking, considering that Leptopilina belongs to an entirely different group within Eucoilinae (the tribe Eucoilini)). Indeed, in all published phylogenetic analyses where it has been tested, Ganaspis has come out non-monophyletic (
In conclusion, working out the limits of these three species of Ganaspis, like in other cases of cryptic species complexes, has required a great deal of behavioral study, genetic study, and morphological study, and benefitted from the reciprocal illumination they have offered. This has also involved researchers from around the world, conducting very careful work documenting these species, as well as the centralization of voucher specimens such that various lines of evidence can be directly, and quickly, compared. Thus, this work represents a celebration of international collaboration between research groups in different countries with different specializations for an integrated solution to independently noted problems.
Collectively we would like to thank the following people and groups for providing the specimens, and data, needed to complete this project: members of the ARS-BIIR group in Newark, DE; the Daane Lab, UC Berkeley; Abram Lab, Agassiz Research and Development Centre, Agassiz, British Columbia, Canada; M. Giorgino and E. Guerrieri, Institute for Sustainable Plant Protection, National Research Council of Italy, via Università 133, 80055 Portici, Italy; and the Kimura Lab, Hokkaido University, Sapporo, Japan. Jim Woolley (retired, Texas A&M), Fredrik Ronquist (Naturhistoriska riksmuseet, Stockholm, Sweden) and combined SI-USDA Hymenoptera Unit at NMNH helped flesh out ideas and concepts presented here. JSC was financially supported by the National Science Foundation grants DEB 1754242 and DEB 1927161, and would like to thank Sean Brady and Ted Schultz (Department of Entomology, NMNH). The editor, Miles Zhang, and the two reviewers, Mar Ferrer-Suay and Simon van Noort, helped improve this manuscript. Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. USDA is an equal opportunity provider and employer.
Supplementary data
Data type: xlsx
Explanation note: table S1. Voucher specimen data (FIMS) and SRA accession numbers for the Ganaspis samples used in this study; table S2. Assembly statistics for all the samples included in this study; table S3. SPRUCEUP manual cut-off employed in this study; table S4. Alignment statistics and summary of alignments and partitions generated in this study; table S5. Summaries of intra and inter tree distances for the three major clades identified in this study: Ganaspis brasiliensis, G. lupini sp.nov., and G. kimorum sp. nov.; table S6. Voucher specimen data and GenBank accession number for the Ganaspis samples for which COI sequences were generated.