Short Communication |
Corresponding author: Luke R. Tembrock ( 101020tembrock@gmail.com ) Academic editor: Jose Fernandez-Triana
© 2022 Christina R. Wilson, Crystal Cooke-McEwen, Todd M. Gilligan, Luke R. Tembrock.
This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
Citation:
Wilson CR, Cooke-McEwen C, Gilligan TM, Tembrock LR (2022) Detection of Centistes sp. (Hymenoptera, Braconidae) from intercepted Diabrotica undecimpunctata (Coleoptera, Chrysomelidae) using CO1 DNA barcodes and larval morphology. Journal of Hymenoptera Research 91: 69-81. https://doi.org/10.3897/jhr.91.84139
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Globalized trade has resulted in the incidental translocation of numerous insect species, some of which have become invasive in their expanded ranges. While rigorous inspection programs are a regular part of commodity importation, rarely if ever are the internal contents of intercepted insects examined. As part of a genetic diversity project on intercepted Diabrotica undecimpunctata beetles, we detected CO1 DNA that closely matched sequences from Centistes parasitoid wasps in 9% of our samples. The presence of internal parasitoids was confirmed through dissections and imaging, wherein the samples were morphologically consistent with Centistes larvae. Such a discovery suggests that insect translocation as part of trade can be more diverse than initially thought. The case of Centistes in imported Diabrotica may present a positive benefit specifically to agroecosystems through the biological control of pest beetles like Diabrotica. However, drawbacks from such introductions include off-target parasitism of non-pest beetles and resultant impacts to insect populations in undisturbed ecosystems. Thus, examination of intercepted insects beyond the initial species identification is warranted to better understand the potential impacts of human mediated insect translocations. Methods employing high-throughput sequencing and metabarcoding are well suited for such broad-scale identification projects where Diabrotica would be an excellent candidate for this work.
Agricultural trade, biological control, mitochondrial DNA, molecular identification, parasitoids, spotted cucumber beetle
In 2021, the value of United States (US) agricultural imports exceeded $14.6 billion (
Given the lack of studies regarding parasitoid translocation, we examined recent D. undecimpunctata interceptions to determine if parasitoids could be found in intercepted beetles and if so in what abundance. To do this CO1 barcodes attained from 109 intercepted Diabrotica beetles were scanned for evidence of parasitoid wasp DNA. Ten individuals were found to have detectable hymenopteran DNA through comparisons to public databases and further dissected to confirm the presence of parasitoid larvae through morphological examination. Considering the parasitoid fauna of intercepted insects provides a rich data set to characterize agricultural biodiversity more comprehensively as well as assess threats or benefits from such organisms to domestic agriculture. While our study employed a relatively simple approach it clearly showed that Diabrotica parasitoids are being translocated through trade in agricultural commodities. Additional work should be conducted to better understand how such parasitoid translocation might affect native beetle populations including the reduction of pest species from agroecosystems.
In this study, DNA was extracted from 109 intercepted (from agricultural commodities), ethanol preserved, whole individual beetle specimens using a (nondestructive) Lucigen MasterPure DNA extraction kit (Lucigen Corp., Middleton, WI, USA) with modifications (
The molecular identification of samples using CO1 barcodes generated in this study employed several different strategies. First each CO1 sequence was queried against the NCBI nucleotide database using BLASTn (
Results of database searches using CO1 barcode sequences from intercepted Diabrotica beetles as queries. Parasitoid determinations were based on database matches and examination of morphological characters from dissections when possible. Agricultural commodity refers to the plant material on which the Diabrotica beetles were found, all interceptions were made from shipments originating from Mexico with destinations in the US. The last two columns are the best hits from searches to the BOLD and GenBank (using BLASTn) databases respectively.
Lab ID | Parasitoid Determination | Agricultural Commodity | GenBank Accession | Barcode of Life Database (% similarity) | BLASTn (e-value for best hit) |
---|---|---|---|---|---|
PfD 002 | Braconidae Centistes sp. | Romaine Lettuce | ON713979 | Hymenoptera Braconidae Centistes (92.23) | Centistes sp. (2e-123) |
PfD 027 | Braconidae Centistes sp. | Romaine Lettuce | ON713980 | Hymenoptera Braconidae Centistes (92.74) | Hymenoptera sp. (4e-165) |
PfD 065 | Braconidae Centistes sp. | Romaine Lettuce | ON713981 | Hymenoptera Braconidae Centistes (92.06) | Centistes sp. (3e-121) |
PfD 074 | Braconidae Centistes sp. | Lettuce | ON713982 | Hymenoptera Braconidae Centistes (92.05) | Hymenoptera sp. (8e-127) |
PfD 076 | Braconidae Centistes sp. | Celery | ON713983 | Hymenoptera Braconidae Centistes (91.84) | Centistes sp. (1e-115) |
PfD 080 | Braconidae Centistes sp. | Romaine Lettuce | ON713984 | Hymenoptera Braconidae Centistes (92.96) | Hymenoptera sp. (1e-150) |
PfD 088 | Braconidae Centistes sp. | Lettuce | ON713985 | Hymenoptera Braconidae Centistes (92.33) | Hymenoptera sp. (8e-127) |
PfD 091 | Braconidae Centistes sp. | N/A | ON713986 | Hymenoptera Braconidae Centistes (90.13) | Hymenoptera sp. (8e-127) |
PfD 096 | Braconidae Centistes sp. | N/A | ON713987 | Hymenoptera Braconidae Centistes (91.76) | Hymenoptera sp. (2e-147) |
PfD 105 | Braconidae Centistes sp. | N/A | ON713988 | Hymenoptera Braconidae Centistes (91.67) | Hymenoptera sp. (4e-109) |
Beetle DNA samples that produced a CO1 sequence that were non-coleopteran were further examined through dissection to determine if parasitoid larvae were present. Beetles were dissected after soaking in 10% KOH for approximately 60 minutes. The elytra and wings were removed, and the abdomen and thorax were cut open laterally using small Vannas spring scissors (Fine Science Tools, Foster City, CA). The contents of the body were searched for parasitoids, which were transferred to 100% ethanol prior to slide mounting using Euparal. Slide-mounted parasitoids were imaged using a Nikon Eclipse 80i compound phase contrast/DIC microscope equipped with a Nikon DS-Fi2 digital camera (Nikon Instruments, Inc., Melville, NY). Photos were taken with Nikon Elements v 4.60 imaging software and edited in Adobe Photoshop.
From a sample set of 109 D. undecimpunctata, 10 produced sequences that resolved with CO1 sequences from the hymenopteran genus Centistes Haliday (all references to this genus are sensu Stigenburg et al. 2015 unless noted otherwise) as determined from searches to large public databases (Table
Phylogenetic analyses using CO1 sequences from parasitoids in D. undecimpunctata aligned with the most similar sequences from NCBI. Complete tree is BI using the GTR nucleotide substitution model with PP branch support, subtrees show results from the NJ (JK support) and ML (BS support) methods to highlight the similarities in resolution between methods in relation to the samples generated in this study. All analyses used the same MAFFT alignment (Suppl. material
Beetles that produced non-coleopteran CO1 barcodes, were dissected and carefully examined for the presence of larval parasitoids. In four of the ten Diabrotica beetles dissected recognizable parasitoid larvae were recovered (Fig.
Centistes larvae dissected from Diabrotica beetles that produced CO1 sequences with matches to Centistes (see Table
During the course of a project to characterize the genetic diversity of D. undecimpunctata beetles using CO1 barcodes we found ten specimens contained sequences that were consistent with the parasitoid hymenopteran genus Centistes (Table
The results of the Sanger sequencing data in this study are somewhat unexpected in that it is assumed the number of beetle reads would far exceed the number of parasitoid reads based on the size of the two organisms. Several technical and biological factors may help explain why parasitoid Sanger reads were recorded in greater number than beetle reads. First, it should be noted that the electropherograms for samples that produced Centistes sequences also contained higher levels of background peaks suggesting that both beetle and parasitoid barcodes were being amplified and sequenced (Suppl. material
Given the lack of an obvious technical explanation, biological attributes should be considered to help clarify how CO1 reads from the nearly microscopic Centistes larvae could saturate those from the comparatively massive host. The differences in life stage between larval Centistes and adult Diabrotica may underlie differences in mtDNA copy number as has been shown in different life stages of female Drosophila (
The presence of clearly identifiable braconid larvae in at least three of the beetles that produced CO1 sequences matching to Centistes provides unequivocal confirmation that these beetles were parasitized. What is less clear is the exact identity of the parasitoid given the limited number of Centistes CO1 sequences available in public repositories and the difficulty in making species level identifications from larvae. Despite this lack of available sequence data, the species C. diabroticae and C. gasseni have been repeatedly described from the literature to feed on several adult species of Diabrotica and related Acalymma (
It has long been known that insects harbor a broad array of species in and on their bodies including parasitoids, arachnids, fungi, bacteria, and viruses (
We thank Frida A. Zink and Alicia E. Timm for their helpful insights on numerous technical aspects of this study and Charlotte Aldebron for discussions on beetle and parasitoid biology. We thank Anthony Boughton, Tyler Hedlund, Garrett Hughes, and Alexander S. Konstantinov for their ongoing work to collect, identify, and preserve Diabrotica beetles for use in this and similar studies. Funding was provided in part through USDA cooperative agreement AP19PPQS&T00C136 to Luke R. Tembrock at Colorado State University. The authors declare no competing interests.
DNA alignments and figures
Data type: Docx file.
Explanation note: DNA alignments, Sanger electropherograms, and phylogenetic trees.